Helical PlatformEmbed my dataset with a Helical model.Helical PlatformFine-tune a model on my labelled dataset.

Helical lets you run biological foundation models on your own single-cell data, from the chat you're already in. Upload an .h5ad dataset into your private Helical project, pick a model — scGPT, Geneformer, TranscriptFormer, Cell2Sentence or Nicheformer — and compute embeddings on Helical's GPUs. Follow the run while it goes, read the error if it fails, and download the embeddings when it finishes. Nothing starts on its own. A run is quoted and queued first, and only begins once you approve it in a second, separate step. Every tool works inside the one project your account owns. Runs use the credits in your existing Helical account.